Posts

Jupyter notebooks in PyCharm

Today we’re going on a Python adventure using Jupyter notebooks and PyCharm! First, let’s talk about what these are. Jupyter Notebook is a web application where you can create interactive coding documents, supporting many programming languages including both Python and R as well as Markdown.

Making beautiful interactive slides with revealJS

Today I’ll show you how to spice up your presentations with revealJS in R. This is an HTML presentation framework that allows you to share your slides on the web, add custom animations, embed websites into your slides, and more!

Thermodynamic Modeling with CHNOSZ

Are you curious what sorts of metabolic processes might be occurring at your study site? Using in situ geochemical data, you can model the Gibbs free energy available from metabolic reactions and predict which metabolisms are energetically favorable!

Create your own site with blogdown in R

Wanna create and host your own site for free? I’ll show you how I created and hosted my site caitlincasar.com! We’ll go over the two basic tools I used: the blogdown package in R and Github Pages.

Making figures for microbial ecology: Interactive NMDS plots

This is the one of several tutorials I’m putting together for making figures that are common in microbial ecology. Today we’ll create an interactive NMDS plot for exploring your microbial community data.

Making figures for microbial ecology: Interactive bar plots

Fork This is the first of several tutorials I’m putting together for making figures that are common in microbial ecology. Today we’ll start with an interactive bar plot for exploring your microbial community data.

10 Cool things you can do with Jupyter

Today I’m sharing my top 10 list of cool things you can do in Jupyter notebooks! 1. Jupyter notebook extensions You can add functionality to your Jupyter notebook with Jupyter Notebook Extensions!